Expasy - Translate tool
Translate is a tool which allows the translation of a nucleotide (DNA/RNA) sequence to a protein sequence.
Expasy - Translate
Translate. Home; Programmatic Access; Contact; Translate - Programmatic access Parameters dna_sequence Bare nucleotide sequence output_format The output format.
Expasy - Compute pI/Mw tool
Alternatively, enter one protein sequence in single letter code. The theoretical pI and Mw will then be computed. Examples
SIM Alignment Tool - Expasy
SIM is a program which finds a user-defined number of best non-intersecting alignments between two protein sequences or within a sequence . Once the alignment is computed, you can view it using LALNVIEW , a graphical viewer program for pairwise alignments [ reference to LANVIEW ].
Expasy - ProtParam
ProtParam [Documentation / Reference] is a tool which allows the computation of various physical and chemical parameters for a given protein stored in UniProtKB or for a user entered protein sequence.
Expasy - RandSeq
RandSeq is a tool which generates a random protein sequence. Please fill out this form to submit the parameters for the generation of a random sequence. Size of the sequence (20 to 9999 amino acids):
Protein characterization tools in the context of PMF experiments include FindMod, to predict posttranslational modifications and single-amino acid substitutions; GlycoMod, a tool to predict the possible compositions for glycan structures, or compo-
SIB Swiss Institute of Bioinformatics | Expasy
Operated by the SIB Swiss Institute of Bioinformatics, Expasy, the Swiss Bioinformatics Resource Portal, provides access to scientific databases and software tools in different areas of life sciences.
UniProt Knowledgebase User Manual - Expasy
Because most protein sequences are derived from translation of nucleotide sequences and are mere predictions, the PE line indicates what the evidences are of the existence of a protein. Note that the 'PE' line does not give information on the accuracy or …
Expasy - FindMod tool
Protein Identification Tools - Mass values used. 1. Post-translational modifications - 2. Aminoacids - 3. Other masses 1. Post-translational modifications (see also this page) abbreviation monoisotopic average UniProtKB/Swiss-Prot annotation ( controlled vocabulary) Acetylation: ACET: 42.0106: 42.0373: N-acetylalanine N2-acetylarginine ...