kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.

2020年8月30日 · 写在前面 Kallisto 是一款 “Alignmnet-Free” 的转录组表达量估计的工具。 其提出了一种 “pseudoalignment ” 的概念，实则基于 Kme... 登录 注册 写文章

kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.

2016年4月4日 · We present kallisto, an RNA-seq quantification program that is two orders of magnitude faster than previous approaches and achieves similar accuracy.

kallisto 0.50.0 Computes equivalence classes for reads and quantifies abundances Usage: kallisto quant [arguments] FASTQ-files Required arguments: -i, --index=STRING Filename for the kallisto index to be used for quantification -o, --output-dir=STRING Directory to write output to Optional arguments: -b, --bootstrap-samples=INT Number of ...

2018年5月30日 · Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation. - Kallisto · griffithlab/rnaseq_tutorial Wiki

2024年9月16日 · Near-optimal RNA-Seq quantification. Contribute to pachterlab/kallisto development by creating an account on GitHub.

KALLISTO (Callisto) was a daughter of the Arkadian King Lykaon (Lycaon) and a hunting companion of the goddess Artemis. There were several contradictory versions of her story but ancient writers all agreed on a number of details:--that she was seduced by the god Zeus, transformed into a bear, bore a son named Arkas (Arcas), and was hunted down ...

kallisto, published in April 2016 by Lior Pachter and colleagues, is an innovative new tool for quantifying transcript abundance. kallisto uses the concept of ‘pseudoalignments’, which are essentially relationships between a read and a set of compatible transcripts. kallisto obtains highly accurate pseudoalignments efficiently using k-mers ...

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